Author: Roberto de la Fuente
Genetic modifications are still seen with both excitement and reticence by general population. This poses a challenge, being scientists and media responsible for the information available to the public. Besides GMOs (genetically modified organisms) for industry or food, the last decade has witnessed a growing interest in genetic modifications and genome-editing techniques applicable to humans. So, it is important to note that people who are not specialists in the field have every right to be aware of the progress on these technologies and to have access to breaking-news on the subject.
The latest groundbreaking achievement has been just published online this week in Nature by an international collaboration of different groups (1). The paper reports the “correction” of a mutated gene in human embryos that leads to a severe heart disease in adults. This mutation consists in a four-nucleotide deletion in the MYBPC3 gene, which encodes a protein essential for the proper development and structure of the heart (cardiac myosin-binding protein C or cMyBP-C) that affects contraction and relaxation of the cardiac fibres. Individuals carrying this mutation suffer from hypertrophic cardiomyopathy or HCM, and it is the cause of unusual cardiac growth, arrhythmias and a high percentage of sudden death due to heart failure in otherwise healthy people. Because it is an autosomal dominant mutation, the disease is manifested with just one of the two alleles mutated. Additionally, it is normal that the individual has already fathered offspring when the disease manifests, which implies the mutation has been passed on to the next generation.
This is an example of those diseases in which prevention is not yet possible, and the only viable treatments are symptomatic attenuation. Therefore, a current possible approach for preventing transmission of the mutation to the offspring is preimplantation genetic diagnosis (PGD), which allows for discarding affected embryos (theoretically 50% of them because of the dominant inheritance).
Scientists found the goldmine for genetic modifications at the beginning of the 21st century with the development of the ZFN (zinc finger nucleases) that led to TALENs (transcription activator-like effector nucleases). These systems gave enormous expectations on the possibilities for editing the genome. A multitude of studies were carried out on these elements in different species, but one of the methodological obstacles was the need to design specific proteins that would recognize specific DNA sequences in each case, which resulted in promising but eventually relatively low efficient approaches in many cases. Moreover, the difficulty for the exonucleases to enter the cell was a problem to deal with and not always appropriately solved.
The mechanism of action of the CRISPR-Cas9 system is based on the recognition of specific DNA sequences by a guide RNA, and their cleavage by the Cas9 nuclease. CRISPR stands for clustered regularly interspaced short palindromic repeats. These DNA sequences were originally discovered in the 90's by Dr. Francis Mojica (2), and later developed by other groups into the genetic tool that is nowadays giving so many surprises. The use of this technology allows for modification, repair or substitution of virtually any sequence within the genome. Cleavage sites of DNA by the nuclease are marked as DNA double-strand breaks (DSBs), which are repaired by specific cell mechanisms. One of them is usually the non-homologous end-joining (NHEJ), which essentially restores the DNA double strand. However, this method commonly induces mutations because there is no actual fidelity when it comes to DNA repair, and the result is the introduction of insertions and/or deletions (“indels”), so the DNA sequence is largely altered. From the point of view of therapeutic applications, this mechanism is clearly not an option if the aim is to “fix” the mutation and restore the gene to the original non-mutated form (“wildtype allele”).
On the contrary, there is another DNA repair mechanism that the cell can also use, depending on the activation molecular pathway, and the result is the so-called homology-directed repair (HDR), which literally performs a “copy’n’paste” from a template. Thus, using a homologous DNA sequence from an exogenous sample, the mutated gene can be modified; the CRISPR-Cas9 system recognizes the target sequence, cuts it off and replaces it with a new “healthy” sequence using the provided sample as template. Unfortunately, the efficiency of HDR is not high yet, so therapeutic applications do not seem to be currently viable.
WHAT DID THE AUTHORS ACTUALLY DO?
In the paper, the authors used heterozygous zygotes in which the mutant allele had been contributed by the sperm, while the copy from the oocyte came from healthy donors. Interestingly, DNA breaks introduced in the MYBPC3 paternal gene were mostly repaired by using the oocyte DNA as a template (HDR), which suggested a preferential or specific mechanism of DNA repair in the germline. This may represent a milestone for future approaches in the gene-editing strategy for curing genetic diseases in embryos. Treated embryos later developed into blastocysts with a similar success rate to that from control non-treated embryos, and the overall efficiency rate of gene-editing from the mutated form to the original wildtype form was about 70%.
These results seem to be a promising start, but they also mean real therapeutic applications are still far down the road. Also, other problems such as off-target hits (mutations induced by the CRISPR-Cas9 system in different DNA sites) or embryo mosaicism due to gene-editing are an obstacle for the purpose of clinical applications. Thereby, even if these effects are minimized, they still need to be completely eliminated before any similar approach can be brought into the clinic to cure a genetic disease.
This is where we are now as for the scientific and physical reality. It is clear that extreme caution needs to be a must in the laboratory when performing these experiments. However, what about ethical concerns? Similarly to other common practices, it is necessary to step back for a minute and think twice whether gene-editing is a good idea, and if so, when and why. We talk here about genetic problem solving, improved gene therapy and definite solutions to currently lethal or sublethal conditions. Again, the idea is that, potentially, any gene could be eventually modified in order to turn a genetically affected individual into a perfectly healthy person. Diabetes, Huntington’s disease, cystic fibrosis, hypertrophic cardiomyopathy... any epidemiologically significant condition could be subjected to removal from a population. That is the current main goal of genome-editing.
THE ETHICAL IMPLICATIONS
Generally speaking, this sort of treatments and techniques must be performed at some embryo stage, and research on human embryos is forbidden in most countries (meaning forbidden in those countries that have an actual regulation on this issue; there are too many countries that lack the proper regulation to act on these matters, and so they could potentially perform certain kind of operations that might be doubtful from the ethical point of view). The current situation has been catching attention from the media since a group in China published their experiments on human embryos in 2015 (3). Based on the author's claims, research was perfectly legal and it had been approved by the corresponding Chinese authorities. Plus, the embryos used for the experiments were actually not viable (3PN embryos), so there was no issue about any potential future human being. The end point of the Chinese group was to demonstrate that this research was already possible, doable anywhere and by anyone, and so it must be regulated worldwide. Besides other experiments on human somatic line material, genetic modification of human embryos hit the media again in February 2016, when Dr. Kathy Niakan’s group from the Francis Crick Institute in London specifically asked the HFEA (Human Fertility and Embryology Association) for permission to conduct experiments on human embryos. Permission was granted, and so things are since running.
What does this mean? For a large part of the scientific community, the Chinese opened the Pandora box. But many others think that paper proofed the inevitable, and the British group took the lead to demonstrate that genetic modification must be studied in humans in order to know exactly what the consequences and limitations are. On these grounds, in September 2015, the Hinxton Group (a compound of specialists in different fields and topics in experimental and social sciences, as well as philosophers and humanists) had previously met in Manchester and had released a statement in which they supported research on human embryos for genetic modification, and of course they also explained why. Essentially, in the text they referred to the needs of understanding the right tools and biological models for research, the consequences and the responsibilities, and they made emphasis on the need and urgency of letting the general population know about genetic modification, genome-editing technologies, reasons and consequences.
In 2015, Dr. Jennifer Doudna, world expert on CRISPR systems from University of California, Berkeley, exposed her ideas on human embryo genome-editing (4). A summary of her main points would be as follows:
1) Safety. Need for ensuring efficiency with no off-target hits to reproduce experiments.
2) Communication. Essential to make scientific progress accessible to scientists, public and society to make them aware of the importance of the new and reach properly based opinion.
3) Guidelines. Collaboratively elaborate policies along with scientists and experts for standards and to establish what is ethically acceptable in research.
4) Regulation. Apply those guidelines to appropriately conduct research and look out for the compliance of the agreement.
5) Caution. Technology cannot be applied to routine practice yet (such as for assisted reproduction).
WHAT TO EXPECT IN THE FUTURE
The research published this week is not the only one on human embryo genetic modification. Different groups keep publishing evidences that show these techniques are working well enough to invest properly and dedicate substantial efforts to improve it and eliminate every single problem mentioned earlier (5). It is certain that many more publications are yet to come, and the latest paper in Nature is only part of the beginning. This publication has once again shaken the scientific community opinion, but favourable reactions have also been immediate. In fact, two important institutions such as the US National Academy of Science and National Academy of Medicine have released their own report as well, backing research on gene-editing of human embryos.
Genetic engineering is since many years ago an exciting and still developing field with unimaginable possibilities. We need to step back out of the box, have a look at the big picture and think. Then, work on it, get better on it and become successful in (1) identifying reasons/circumstances to apply genetic modifications, (2) perform genome-editing without error or off-target hits, and (3) explaining why this is important to the general public. Given differences between countries, legislation, lifestyle, economic resources and technological progress, it is likely that the debate will remain open for a long time. But society must be aware of the progress of science, and people need to know the hows and whys of scientific research and how it can affect society.
If you want to know more about CRISPR-based technology, do not miss the videos from our section.
1. Ma H, Marti-Gutierrez N, Park SW, Wu J, Lee Y, et al. Correction of a pathogeneic gene mutation in human embryos. Nature. 2017; doi:10.1038/nature23305
2. Mojica, FJM, Díez-Villaseñor C, Soria E, Juez G. Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria. Mol Microbiol. 2000; 36:244-246
3. Liang P, Xu Y, Zhang X, Ding C, Huang R, et al. CRISPR/Cas9-mediated gene editing in human tripronuclear zygotes. Protein Cell. 2015; 6(5):363-372
4. Doudna J. Editing needs scrutiny. Nature. 2015; 528(7580):S6
5. Tang L, Zeng Y, Du H, Gong M, Peng J, Zhang B, et al. CRISPR/Cas9-mediated gene editing in human zygotes using Cas9 protein. Mol Genet Genomics. 2017; 292(3):525-33.
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